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I used plain vodka in all the bottles but one. The other I used raspberry vodka to see what the outcome will be.
I leave the vanilla beans in the extract container as I use it (or when I give it as gifts). I print up pretty labels and advise the gift recipients to just top the container off with more vodka when they use the vanilla extract for baking. If they or you choose not to do that, then the beans must be removed as they will mold (not pretty). If you do top it off, after awhile the flavor will lessen, but you can always just drop in another vanilla bean or two and it will be back up to strength.
If you do decide to take the beans out of the extract mixture, do not discard them! Rough cut them and toss them in with a cup of sugar and after a few weeks… Vanilla Sugar!